Seal should be in the snout of the box, no alignment necessary.
Some shafts wear before the seal, so move the new one a wee bit after emery paper on the shaft to take the wear edge off.
It may just be me, but I have to say I have never found any of these epoxy metal fillers to be a success. I would recommend an attempt to weld the crack, using a high nickel cast rod, and only welding an inch at a time, and plenishing the weld as it cools. Clean up the end of the bead, and then weld back to it, but no more than an inch at a time. Welding back to the weld every time solves the some what tricky restart problem. Failing that, chain studding will be a permanent, if time consuming repair.While the cylinders are out and the loose rust has been cleaned off and it's dry, I am going to paint the inside of the block at the crack with a good coat of Hammerite, leaving the block on its side so the paint doesn't run but has the opportunity to settle into the crack.
Don't know whether it will help it, but feels better. Then JB high heat putty on the outside later.
It may just be me, but I have to say I have never found any of these epoxy metal fillers to be a success. I would recommend an attempt to weld the crack, using a high nickel cast rod, and only welding an inch at a time, and plenishing the weld as it cools. Clean up the end of the bead, and then weld back to it, but no more than an inch at a time. Welding back to the weld every time solves the some what tricky restart problem. Failing that, chain studding will be a permanent, if time consuming repair.
Oil held in place by the felt ............
if you hold the distributor drive solid, if you can flick the rotor in the direction of rotation (against spring pressure) and it returns back to where it was, it will be fine. It wont want much ignition advance to run fine.
Sounds as though you are getting on well ...........