The "I`ve got it" thread...

RushesToo

Member
Location
Fingringhoe
I have to wonder why the Government (useless) has not introduced bulk sample testing if they are so short of capacity as claimed. We have done this in livestock testing for decades and it could reduce( or increase) the amount of tests required by a minimum of 50% and probably nearer 70 to 80% with no real reduction in accuracy. One can only assume that as the snouts in the trough brigade who run it are paid per sample they are against it. :mad: :banghead:
There is a form of pooled testing being undertaken, visual example below:

1600720511274.png


And link to it here:

 

Muck Spreader

Member
Livestock Farmer
Location
Limousin
There is a form of pooled testing being undertaken, visual example below:

View attachment 909009

And link to it here:


A ten sample is common in veterinary testing, but I've noticed that some African countries are using a 25 pooled sample I assume due to the shortage of capacity. However, a number of US trials see 8 as being the optimum number.

Forgot to say I was just talking about the traditional method of pooling. What they are showing is a more sophisticated method where an algorithm does the analysis and can id the positive sample. So there is then no need to resample a positive batch to find the individual one.
 
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Highland Mule

Member
Livestock Farmer

Highland Mule

Member
Livestock Farmer
For got to say I was just talking about the traditional method of pooling. What they are showing is a more sophisticated method where an algorithm does the analysis and can id the positive sample. So there is then no need to resample a positive batch to find the individual one.

I could see how it would work well when the number of positive sames is a very small percentage of the total. With what we have now, that is not the case and such a system would fall over very quickly.
 

Muck Spreader

Member
Livestock Farmer
Location
Limousin
Current positive test rate is running at around 6% in Scotland. I can see a lot more false positives being returned with a pooled regime. My own random trial suggested 6% genuine positive could give 7 false positive on a 10x10 grid.
You don't really get false positives on a PCR test. If there is it's usually down to some sort of contamination. False negatives are a different matter.
 
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Highland Mule

Member
Livestock Farmer
You don't really get false positives on a PCR test. If there is it's usually down to some sort of contamination. False negatives are a different matter.

I meant re the matrix testing method. If you try sticking half a dozen dots on the pooled test method above, then the number of rows and columns with a positive will add in some false positives. Get a grid on a sheet of paper and have a try. I got seven extra from six deliberate.
 

JCMaloney

Member
Location
LE9 2JG

Muck Spreader

Member
Livestock Farmer
Location
Limousin
I meant re the matrix testing method. If you try sticking half a dozen dots on the pooled test method above, then the number of rows and columns with a positive will add in some false positives. Get a grid on a sheet of paper and have a try. I got seven extra from six deliberate.

There is good explanation of algorithmic pooling here (5mins in) which also covers the false positives and negatives though the dilution of the samples.
 

JCMaloney

Member
Location
LE9 2JG
Seems the local alarm bells are ringing. Hospital admission data, it`s about 2 weeks behind but those two weeks are upward. That could mean we have either a slight "ripple" rise like June or it is a the start of a second wave.
1600880776876.png
 

Highland Mule

Member
Livestock Farmer
But with respect, the number of infections isn't directly a problem. Of course it gives rise to illness, and there's a time lag. But illness is the only directly relevant measure surely?

That depends if you want to be proactive or reactive. For management of anything like this, you want to be using leading indicators rather than lagging ones.
 

arcobob

Member
Location
Norfolk
The problem we have is with a very small minority .
Last week it has become appparent the Bolton outbreak was started by one geezer who didn't quarantine on return from Spain , went out on the razz with his mates and infected half the town
Should be locked up the tosser
Shot. He has helped ruin it for thousands of others. He is far from being alone unfortunately.
 

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